Index
A
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B
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C
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D
|
E
|
F
|
G
|
H
|
I
|
L
|
N
|
P
|
R
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S
|
T
|
U
A
assign_evidence() (in module pygenprop.assign)
assign_functional_element() (in module pygenprop.assign)
assign_genome_property() (in module pygenprop.assign)
assign_step() (in module pygenprop.assign)
AssignmentCache (class in pygenprop.assign)
B
bootstrap_assignments() (in module pygenprop.results)
build_genome_property_connections() (pygenprop.tree.GenomePropertiesTree method)
C
cache_property_assignment() (pygenprop.assign.AssignmentCache method)
cache_step_assignment() (pygenprop.assign.AssignmentCache method)
calculate_property_assignment_from_all_steps() (in module pygenprop.assign)
calculate_property_assignment_from_required_steps() (in module pygenprop.assign)
calculate_step_or_functional_element_assignment() (in module pygenprop.assign)
child_genome_property_identifiers (pygenprop.genome_property.GenomeProperty attribute)
consortium_identifiers (pygenprop.evidence.Evidence attribute)
(pygenprop.tree.GenomePropertiesTree attribute)
create_assignment_tables() (in module pygenprop.results)
create_graph_links_json() (pygenprop.tree.GenomePropertiesTree method)
create_graph_nodes_json() (pygenprop.tree.GenomePropertiesTree method)
create_marker_and_content() (in module pygenprop.database_file_parser)
create_metabolism_database_mapping_file() (pygenprop.tree.GenomePropertiesTree method)
create_nested_json() (pygenprop.tree.GenomePropertiesTree method)
create_step_table_rows() (in module pygenprop.results)
create_synchronized_assignment_cache() (in module pygenprop.results)
D
DatabaseReference (class in pygenprop.database_reference)
differing_property_results (pygenprop.results.GenomePropertiesResults attribute)
differing_step_results (pygenprop.results.GenomePropertiesResults attribute)
E
Evidence (class in pygenprop.evidence)
extract_identifiers() (in module pygenprop.database_file_parser)
F
flush_property_from_cache() (pygenprop.assign.AssignmentCache method)
FunctionalElement (class in pygenprop.functional_element)
G
generate_json_tree() (pygenprop.results.GenomePropertiesResults method)
genome_properties (pygenprop.evidence.Evidence attribute)
(pygenprop.step.Step attribute)
genome_property_identifiers (pygenprop.assign.AssignmentCache attribute)
(pygenprop.evidence.Evidence attribute)
(pygenprop.step.Step attribute)
(pygenprop.tree.GenomePropertiesTree attribute)
GenomePropertiesResults (class in pygenprop.results)
GenomePropertiesTree (class in pygenprop.tree)
GenomeProperty (class in pygenprop.genome_property)
get_evidence_identifiers() (pygenprop.tree.GenomePropertiesTree method)
get_property_assignment() (pygenprop.assign.AssignmentCache method)
get_property_result() (pygenprop.results.GenomePropertiesResults method)
get_results() (pygenprop.results.GenomePropertiesResults method)
get_results_summary() (pygenprop.results.GenomePropertiesResults method)
get_step_assignment() (pygenprop.assign.AssignmentCache method)
get_step_name() (pygenprop.results.GenomePropertiesResults method)
get_step_result() (pygenprop.results.GenomePropertiesResults method)
H
has_genome_property (pygenprop.evidence.Evidence attribute)
I
interpro_identifiers (pygenprop.evidence.Evidence attribute)
(pygenprop.tree.GenomePropertiesTree attribute)
L
leafs (pygenprop.tree.GenomePropertiesTree attribute)
LiteratureReference (class in pygenprop.literature_reference)
N
name (pygenprop.step.Step attribute)
P
parse_database_references() (in module pygenprop.database_file_parser)
parse_evidences() (in module pygenprop.database_file_parser)
parse_functional_elements() (in module pygenprop.database_file_parser)
parse_genome_properties_flat_file() (in module pygenprop.database_file_parser)
parse_genome_property() (in module pygenprop.database_file_parser)
parse_genome_property_longform_file() (in module pygenprop.assignment_file_parser)
parse_interproscan_file() (in module pygenprop.assignment_file_parser)
parse_literature_references() (in module pygenprop.database_file_parser)
parse_single_evidence() (in module pygenprop.database_file_parser)
parse_steps() (in module pygenprop.database_file_parser)
pygenprop (module)
pygenprop.assign (module)
pygenprop.assignment_file_parser (module)
pygenprop.database_file_parser (module)
pygenprop.database_reference (module)
pygenprop.evidence (module)
pygenprop.functional_element (module)
pygenprop.genome_property (module)
pygenprop.lib (module)
pygenprop.literature_reference (module)
pygenprop.results (module)
pygenprop.step (module)
pygenprop.tree (module)
R
remove_results_with_shared_assignments() (pygenprop.results.GenomePropertiesResults static method)
required (pygenprop.step.Step attribute)
required_steps (pygenprop.genome_property.GenomeProperty attribute)
root (pygenprop.tree.GenomePropertiesTree attribute)
S
sanitize_cli_path() (in module pygenprop.lib)
Step (class in pygenprop.step)
supported_property_results (pygenprop.results.GenomePropertiesResults attribute)
supported_step_results (pygenprop.results.GenomePropertiesResults attribute)
T
to_json() (pygenprop.genome_property.GenomeProperty method)
(pygenprop.results.GenomePropertiesResults method)
(pygenprop.tree.GenomePropertiesTree method)
U
unwrap_genome_property_record() (in module pygenprop.database_file_parser)
Pygenprop
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